Nope, no harm. Just do the math. Since the pack was dead due to leaving the machine on, it makes the math pretty solid. Capacity of pack (1000ma, right?) divided by output it says on wall transformer (isn't it 100ma?). If that's the case, 10 hours to charge a completely dead pack, but I'd add a few hours to that as the charging process isn't very efficient and so in reality takes longer. Now just figure how long you had it charging before you disconnected it and then do the math to figure how many more hours for full charge.
Still not sure because I don't use the stock charger or pack for that matter (I use a 3 cell lipo and my own charger)...Does the light go out on the pack for the GT when it's reached peak, or does it just get dimmer when it's peaked? If anybody can clear that up it'll be good to post in the battery sticky for people, as I see that question pop up a lot on here.
And also, those newer wall transformers for the GT have a red light on them, right? Does it stay on all the time then? I would figure it does and doesn't say turn off when the pack is charged or something. I doubt that, since it's just a simple DC wall transformer.
I'm not sure but I think perhaps the charging "circuit" inside the rechargeable GT pack is little more than a diode and a thermistor. The diode prevents the pack from draining should the wall transformer be unplugged from the wall but left plugged into the pack (diodes only let electricity flow one way), and the thermister just opens if the pack gets too hot (reached full charge and is over charging). Not sure if the GT's charging "circuit" is just that, but I at least know Kered said that was all it was on I think the Sovereign XS packs and I think at least some of the Excalibur stock packs. By using a thermister it's a quick/dirty way to turn off the charge when peaked due to the pack getting warm. Only problem with that is that it will cool down and close again, then charge, get hot, and then open again. That's not very good for a pack, and also thermistors will give out and never re-connect after too many cycles like that. That's why I say do the math and don't trust the stock "charger" at least used with some of the older Sovereigns and Excals, if indeed the GT/Elite packs do have a more sophisticated shut off when the pack is peaked? I really should open my rechargeable pack and see just what kind of circuit is in there. Never paid much attention to it.
If somebody can fill in any of these questions it would be great info to post in the battery sticky.